Pre-course Material

Unix/Linux Tutorial

The three first part from the UNIX Tutorial for Beginners

• Introduction
• chapter 1
• chapter 2

You must use http://uppnex.se/emu/ (or this mirror) to try the commands in the tutorial, otherwise the commands will not work. If you any questions regarding this tutorial contact: martin.dahlo@scilifelab.uu.se

• Using Linux is often the hardest part of the course, so being familiar with writing things on a command-line will help.
  You should at least go through the exercises in the tutorial, no need to know it by heart.

Using UPPMAX

• Make sure that you can login to UPPMAX from your computer before the course starts. Follow these instructions:
  https://www.uppmax.uu.se/getting-started-first-login-to-uppmax

• It is possible to use Mac, Unix/Linux or Windows. (Windows will require installing a special program that you’ll find in the instructions.)

Additional links

Here are links to some discussion fora, which could be useful to answer questions that are not covered by the tutorial manuals.

• Biosupport.se: http://biosupport.se/
• Biostar: http://www.biostars.org/
• SeqAnswers: http://seqanswers.com/

If you feel uncertatin how to work in a terminal window it is important that you go through this tutorial before you start.