Introduction to Metagenomics and Single Cell analysis

Held in Uppsala November 22-23, 2016.

Pre-course material
Course material
Schedule

Maps & Travel Info

Map over Uppsala
Map over Uppsala Biomedical Centre (BMC)
Travel Info
BMC - Angstrom
TO DO AND EAT in Uppsala

Helpful Things

Linux cheat sheet
UPPMAX cheat sheet
How to create a webexport in your project

External Resources

Mac keyboard layouts
IGV (Integrative Genomics Viewer) Home
Samtools Home
BWA Home
GATK Home
SeqAnswers - Next-generation sequencing forum
Biosupport.se - Sweden centered bioinformatics Q&A
Trinity
Cufflinks
Allpaths-lg
BLAT
BLAST
A good explanation of the FASTQ format can be found over at the MAQ web page. It also includes simple Perl code to encode and decode the quality scores.