Part 4 Questions: Coverage plotting, chimera detection and inspection
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Questions:
Q4.1: What was the highest coverage for any of your contigs?
Q4.2: Do you think that the completeness of your SC genome will improve with more sequence data? Why? Will your genome ever be ‘complete’?
Q4.3: How would you explain the coverage patterns you can see on the contigs called NODE_7 and NODE_4.
Q4.4: How many chimeric reads did you find in your original dataset? Do you think this value is a true representation of the total amount of chimeras?
Q4.5: What was the average insert size in this dataset?