Introduction to Genome Annotation

Held in Uppsala April 26-27, 2016.

Important Links

Pre-course material
Uppmax login instructions
Schedule

Maps & Travel Info

Map over Uppsala
Map over Uppsala biomedical center, BMC
Travel Info
Restaurant Koh Phangan
TO DO AND EAT in Uppsala

Helpful Things

Linux cheat sheet
UPPMAX cheat sheet
Mac keyboard layout

External Resources

Mac keyboard layouts
IGV (Integrative Genomics Viewer) Home
Samtools Home
BWA Home
GATK Home
SeqAnswers - Next-generation sequencing forum
Biosupport.se - Sweden centered bioinformatics Q&A
Trinity
Cufflinks
Satuma/Spines
Allpaths-lg
BLAT
BLAST
A good explanation of the FASTQ format can be found over at the] [MAQ web page]. It also includes simple Perl code to encode and decode the quality scores. [MAQ web page]: http://maq.sourceforge.net/fastq.shtml