Schedule

This course is given at Navet (E10) at BMC. Click the heading of a topic to see the lecture slides or lab instructions.

Tuesday 9th

Room: E10:1309
09.00-9.15 Introduction (Elina Staaf, Henrik Lantz)
09.15-10.00 Lecture: Understanding Annotation (Henrik Lantz)
10.00-10.15 Coffee break
10.15-10.30 Lecture: Prokaryote annotation (Lucile Soler)
10.30-12.00 Practical 1: Prokaryote annotation and visualization (Lucile Soler, Mahesh Binzer-Panchal, Henrik Lantz)
12.00-13.00 Lunch
13.00-13.15 Summary of prokaryote annotation exercise (Lucile Soler)
13.15-15.00 Practical 2: Gathering and preparation of data (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)
15.00-15.15 Coffee break
15.15-17.00 Practical 2: Gathering and preparation of data (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)

Wednesday 10th

Room: E10:1309
09.00-9.15 Summary of yesterday’s exercise (Lucile Soler)
09.15-10.00 Lecture: Structural annotation programs and pipelines (Henrik Lantz)
10.00-10.15 Coffee break
10.15-12.00 Practical 3: Structural annotation of eukaryote genomes (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)
12.00-13.00 Lunch
13.00-17.00 Practical 3: Structural annotation of eukaryote genomes (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)

Thursday 11th

Room: E10:1309
09.00-09.15 Lecture: Introduction to manual curation (Henrik Lantz)
09.15-11.15 Practical 4: Manual curation(incl. coffee break) (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)
11.15-12.00 Lecture: Functional annotation (Lucile Soler)
12.00-13.00 Lunch
13.00-16.00 Practical 5: Functional annotation and annotation analysis contd. (incl. coffee break) (Henrik Lantz, Mahesh Binzer-Panchal, Lucile Soler)
16.00-17.00 Wrap-up

Note: The practical exercise sessions will be made on the UPPMAX cluster. »UPPMAX login instructions«