Introduction to Genome Annotation

Held in Uppsala May 15th-17th, 2017.

Important Links

Pre-course material
Uppmax login instructions
Schedule

Maps & Travel Info

Map over Uppsala
Map over Uppsala biomedical center, BMC
Travel Info
TO DO AND EAT in Uppsala
Restaurant Meza

Helpful Things

Unix cheat sheet level1
Unix cheat sheet level2
Unix cheat sheet level3
UPPMAX cheat sheet
Mac keyboard layout

External Resources

Mac keyboard layouts
IGV (Integrative Genomics Viewer) Home
Samtools Home
BWA Home
GATK Home
SeqAnswers - Next-generation sequencing forum
Trinity
Stringtie Satsuma/Spines
Allpaths-lg
BLAT
BLAST
A good explanation of the FASTQ format can be found over at the MAQ web page. It also includes simple Perl code to encode and decode the quality scores.