Click the heading of a topic to see the lecture slides or lab instructions. Slides are added as the course progresses.

Monday 25th
Room: Ekologihuset, Sölvegatan 37, Lund, lecture hall Tanken
10.00-10.15 [Registration and Welcome, presentation of SciLifeLab] (Elina Staaf, Dag Ahrén)
10.15-11.00 Lecture: Introduction to Linux (Valentin Georgiev)
11.00-12.00 Exercise: Introduction to Linux (Valentin Georgiev, Dag Ahrén)
12.00-13.00 Lunch
13.00-14.00 Lecture: Introduction to UPPMAX/UPPNEX (Valentin Georgiev)
14.00-17.00 Exercise: Introduction to UPPMAX/UPPNEX (Valentin Georgiev, Dag Ahrén)

Tuesday 26th
Room: Ekologihuset, Sölvegatan 37, Lund, lecture hall Tanken
09.00-09.30 Lecture: File types in bioinformatics (Valentin Georgiev)
09.30-12.00 Exercise: File types in bioinformatics (Valentin Georgiev, Fredrik Levander)
12.00-13.00 Lunch
13:00-14:00 Lecture: Advanced Linux usage (Valentin Georgiev)
14:00-17:00 Exercise: Advanced Linux usage (Valentin Georgiev, Fredrik Levander)

Wednesday 27th
Room: Ekologihuset, Sölvegatan 37, Lund, lecture hall Tanken (13-17: Maskrosen)
09:00-10.00 Lecture: NGS workflow (Nikolay Oskolkov)
10:00-12.00 Exercise: NGS workflow part I (Nikolay Oskolkov, Markus Ringnér)
12.00-13.00 Lunch
13.00-17:00 Exercise: NGS workflow part II (Nikolay Oskolkov, Markus Ringnér)

18:00- Course dinner at Kulturkrogen, Tegnérsplatsen 4, 223 50 Lund

Thursday 28th
Room: Ekologihuset, Sölvegatan 37, Lund, lecture hall Tanken
09.00-11.00 Lecture: Next Generation Sequencing Overview (Olga Vinnere Pettersson)
11:00-12.00 Lecture: NGS and bioinformatics analysis pipelines (Olga Vinnere Pettersson)
12.00-13.00 Lunch
13.00-14.00 Lecture: RNA sequencing, transcriptome and expression quantification (Dag Ahrén)
14.00-17.00 Exercise: RNA sequencing, transcriptome and expression quantification part I (Dag Ahrén, Markus Ringnér)

Friday 29th
Room: Ekologihuset, Sölvegatan 37, Lund, lecture hall Tanken
09:00-12:00 Exercise: RNA sequencing, transcriptome and expression quantification part II (Dag Ahrén, Markus Ringnér)
12.00-13.00 Lunch
13:00-15.00 Open discussions (Dag Ahrén, Markus Ringnér)