Introduction to Bioinformatics Using NGS Data

Held in Uppsala September 9 - 13, 2019.

Important Links

Pre-course material
Schedule

Helpful Things

Linux cheat sheet
Bash cheat sheet level1
Bash cheat sheet level2
Bash cheat sheet level3
UPPMAX cheat sheet
Mac keyboard layout

External Resources

IGV (Integrative Genomics Viewer) Home
Samtools Home
BWA Home
GATK Home
SeqAnswers - Next-generation sequencing forum
Trinity
Cufflinks
Allpaths-lg