Schedule

This course is given at Navet (E10) at BMC. Click the heading of a topic to see the lecture slides or lab instructions.

Tuesday 25th
Room:
09.00-10.00 Lecture:RNA-seq introduction (Johan Reimegård)
10.15-11.00 Lecture: Short read mapping programs (Pär Engström)
11.00-12.00 Lecture: Short read assembly (Estelle Proux-Wéra)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Pär Engström,Estelle Proux-Wéra, Johan Reimegård)

Wednesday 26th
Room:
09:00-10.00 Lecture: RNA-seq Quality Control (Åsa Björklund)
10.15-11.00 Lecture: Differential expression analysis (Mikael Huss)
11:00-12.00 Lecture: Gene-set analysis and data integration (Leif Väremo)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Mikael Huss, Leif Väremo, Åsa Björklund)
18.00-20.00 Course dinner

Thursday 27th
Room:
09.00-10.00 Lecture: miRNA analysis (Johan Reimegård)
10:15-11:00 Lecture: Single cell RNA-seq analysis (Åsa Björklund)
11:00-12:00 Lecture: Allele Specific Expression (Olof Emanuelsson)
12.00-13.00 Lunch
13.00-16.00 Exercise: (Åsa Björklund, Johan Reimegård)
16.00-17.00 Lecture: Summary of the week (Johan Reimegård)