Schedule

This course is given at Navet (E10) at BMC. Click the heading of a topic to see the lecture slides or lab instructions.

Monday 13th
Room:
09.00-09.15 Lecture:Generall Introduction (Johan Reimegård/Björn Nystedt)
09.15-10.15 Lecture:RNA-seq introduction (Johan Reimegård)
10.30-11.15 Lecture: Short read mapping programs (Pär Engström)
11.15-12.00 Lecture: Short read assembly (Johan Reimegård)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Pär Engström, Johan Reimegård, Åsa Björklund)

Tuesday 14th
Room:
09:00-10.00 Lecture: RNA-seq Quality Control (Stefania Giacomello)
10.15-11.00 Lecture: Differential expression analysis (Mikael Huss)
11:00-12.00 Lecture: miRNA analysis (Jakub Orzechowski Westholm)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Mikael Huss, Stefania Giacomello, Jakub Orzechowski Westholm)
18.00-20.00 Course dinner

Wednesday 15th
Room:
09.00-10.00 Lecture: Gene-set analysis and data integration (Leif Väremo)
10:15-11:00 Lecture: Single cell RNA-seq analysis (Åsa Björklund)
11:00-12:00 Lecture: Long read analysis (Adam Ameur)
12.00-13.00 Lunch
13.00-16.00 Exercise: (Åsa Björklund, Leif Väremo, Johan Reimegård)
16.00-17.00 Lecture: Summary of the week (Johan Reimegård)