Schedule

This course is given at BMC Uppsala, Navet Trippelrummet, E10, ground floor map at all times, except for Monday morning when we will be in A7:115a, ground floor map.

Monday 2nd
Room: 9.00-12.00 A7:115a, 13.00-17.00 Trippelrummet
09.00-09.10 Introduction (Åsa Björklund)
09.10-10.00 scRNAseq methodologies and ESCG platform (Karolina Wallenborg)
10.30-11.20 Introduction to read alignment pipelines and gene expression estimates (Johan Reimegård)
11.20-12.00 scRNAseq quality control (Åsa Björklund)
12.00-13.00 Lunch
13.00-13.45 Dimesionality reduction (Per Unneberg)
13.45-17.00 Practical Exercises (Stefania Giaccomello, Johan Reimegård, Åsa Björklund, Verena Kutschera)

Tuesday 3rd
Room: Trippelrummet
09.00-09.50 Data normalization (Nikolay Oskolkov)
10.20-11.20 Clustering techniques and scRNAseq toolkits (Åsa Björklund)
10.20-12.00 Practical exercises(Åsa Björklund, Stefania Giaccomello, Nikolay Oskolkov)
12.00-13.00 Lunch
13.00-17.00 Practical exercises(Åsa Björklund, Stefania Giaccomello, Nikolay Oskolkov)
18.00- Course dinner

Wednesday 4th
Room: 9.00-12.00 A7:115a, 13.00-17.00 Trippelrummet
09.00-9.50 Differential gene expression (Olga Dethlefsen)
10.20-11.10 Drop-seq and spatial transcriptomics of the fetal heart (Stefania Giaccomello)
11.10-12.00 Single cell analysis of midbrain dopamine neurons (Åsa Björklund)
13.00-16.00 Practical exercises (Åsa Björklund, Olga Dethlefsen)
16.00-17.00 Summary of the week (Åsa Björklund)