Schedule

This course is given at Navet (E10) at BMC. Click the heading of a topic to see the lecture slides or lab instructions.

Monday 6th
Room:
09.00-09.15 Lecture:General introduction (Björn Nystedt)
09.15-10.15 Lecture:RNA-seq introduction (Johan Reimegård)
10.30-11.15 Lecture: Short read mapping programs (Pär Engström)
11.15-12.00 Lecture: Short read assembly (Manfred Grabherr)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Johan Reimegård, Pär Engström, Manfred Grabherr)

Tuesday 7th
Room:
09:00-10.00 Lecture: RNA-seq quality control (Stefania Giacomello)
10.15-11.00 Lecture: Differential expression analysis (Johan Reimegård)
11:00-12.00 Lecture: Gene-set analysis and data integration (Leif Wigge)
12.00-13.00 Lunch
13.00-17.00 Exercise: (Johan Reimegård, Stefania Giacomello, Leif Wigge)
18.00-20.00 Course dinner

Wednesday 8th
Room:
09.00-10.00 Lecture: Multivariate analysis (Sanela Kjellqvist)
10:15-11:15 Lecture: MVA test case (Sanela Kjellqvist)
11:15-12:00 Lecture: RNA-seq pipeline (Phil Ewels)
12.00-13.00 Lunch
13.00-14.00 Exercise: (Johan Reimegård, Phil Ewels, Sanela Kjellqvist)
14.00-15.00 Lecture: miRNA analysis (Marc Friedländer)
15.00-16.00 Exercise: (Johan Reimegård)
16.00-17.00 Lecture: Summary of the week (Johan Reimegård)